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Garces L. R., G. T. Silvestre, I. Stobutzki, Gayanilo F. C., F. Valdez, Saupi M., T. Boonvanich, M. Roongratri, P. Thouc, Purwanto, Haroon I., K.N. Kurup, M. Srinath, H.A.B. Rodrigo, M.D. Santos, F.S.B. Tones, M. K.Tan and D. Pauly. 2006, A regional database management system-the fisheries resource information system and tools (FiRST) : Its design, utility and future directions. Fisheries Research.  78: (2-3), pp. 119-129.

Gayanilo, F. C. and J. W. McManus 2006. ReefRanger User Guide: Series 1: Save the Yellow Tangs. Hawai’i Coral Reef Initiative Research Program, University of Hawai’i at Manoa, HI. 13p. (published online)

Gayanilo, F.C., W. Cooper, M. Brandt, A. Yniguez and J. W. McManus. ReefRanger: Authoring Tool. Hawai’i Coral Reef Initiative Research Program, University of Hawai’i at Manoa, HI. 10p. (published online)


Gayanilo, F.C. Jr., Sparre P. and D. Pauly. 2005. FAO-ICLARM Stock Assessment Tools II (FiSAT II). Revised version. User's Guide. FAO Computerized Information Series (Fisheries). No. 8. 168p. (Includes a CD ROM with the software) [web link]

Langdon, C., and M.J. Atkinson. 2005. Effect of elevated pCO2 on photosynthesis and calcification of corals and interactions with seasonal change in temperature/ irradiance and nutrient enrichment, J. Geophysical Res., 110, C09S07, doi:10.1029/2004JC002576. [pdf; JGR Oceans]

Swart, P.K., A. Saied and L. Lamb. 2005. Temporal and spatial variation in the d15N and d13C of coral tissue and zooxanthellae in Montastraea faveolata collected from the Florida reef tract. Limnol. Oceanogr., 50(4):1049–1058 [pdf]


McManus, J.W. and Polsenberg, J.F. 2004. Coral-Algal Phase-Shifts on Coral Reefs: Ecological and Environmental Aspects. Progress in Oceanography Progress in Oceanography 60 (2004) 263–279.


Ablan, M.C.A.,  McManus, J.W., Chen, C.A., Shao, K.T., Bell, J., Cabanban, A.S., Tuan, V.S., Jarayabhand, P., Suharsono, Alcala, A. and Arthana, I.W. 2003. Enhancing the resilience of coral reef resources: Could genetic marking contribute to increasing the resilience of coral reef resources? IHDP Update 2/2003. International Human Dimensions Programme on Global Environmental Change.


Ablan, M.C.A., J.W. McManus, J.W., Chen, C.A., Shao, K.-T.,  Bell, J., Cabanban, A.S., Tuan, V.S. and Arthana, I.W. 2002. Meso-scale Transboundary Units for the Management of Coral Reefs in the South China Sea Area. NAGA- The WorldFish Center Quarterly. Vol.25, No. 3&4 (July - December 2002). p 4-9.

Dickman, C. and J.W. McManus, 2002. Priorities for Carribbean coral reef research: an overview of the results from an international workshop of the National Center for Carribean Coral Reef Research (NCORE). in Report of the Regional Workshop for Tropical Americas, Cancun, Mexican. June 12, 2002 - June 14, 2002. International Coral Reef Initiative (ICRI). pp. 120-128.

Lamb, K.A., Swart, P.K., and Ellis, G.S. 2002. A detailed study of the nitrogen isotopic composition of organic and inorganic nitrogen in a coral reef environment, Proceedings from 2002 Ocean Sciences Meeting, American Geophysical Union, vol.83, no.4.

Lamb, K.A., Swart, P.K., and Ellis, G.S. 2002. Insights into Nitrogen Isotope Fractionation in Coral Reefs, Eos. Trans. AGU, vol.83, no.47, Fall Meeting Suppl., Abstract B71A-0718

Lee, T.N., Williams, E., Johns, E., Wilson, D. and Smith, N. 2002. Transport Processes Linking South Florida Coastal Ecosystems (Chapter 11) in The Everglades, Florida Bay and Coral Reefs of the Florida Keys: An Ecosystem Source Book. CRC Press: pp 309-341.

McManus, J.W. Contributing Author to: Burke, L. et al. 2002. Reefs at Risk Southeast Asia. World Resources Institute. 72 p.

McManus, J.W. (Compiler), 2002. Report from the Information Needs Working Group in Bruckner, A.W.(ed.). Pp. 54-58. NOAA Technical Memorandum NMFS-OPR-24, Silver Spring, MD. 199 pp.

McManus, J.W. 2002. The global importance of Philippine coral reefs. pp. 7-8. In: Alino, P.M, Miclat, E.F.B., Nanola, C.L., Jr., Roa-Quiaouit, H.A., and Campos, R.T. (eds), Atlas of Philippine coral reefs. Goodwill Trading Co., Inc. Manila, Philippines.

Szmant, A.M. 2002. Nutrient Enrichment on Coral Reefs:  Is it a Wide-spread Cause of Coral Reef Decline? Estuaries 25: 743-766.


Chen, C.A., Shao, K.-T.,  Ablan, M.C.A., J.W. McManus, Cabanban, A.S., Tuan, V.S. and Bell, J. 2001 Population genetic analysis of the mitochondrial control region sequences in hardwicki wrass, Thalassma hardwickii, suggests trans-boundary management of fisheries in the South China Sea. 6th Asian Fisheries Forum Book of Abstracts. p. 42 (Abstract).

McManus, J.W. 2001. Coral Reefs. In: J.H. Steele, S.A. Thorpe and K.K. Turekian (eds.) Encyclopedia of Ocean Sciences. Academic Press, London. 3000 pp.

McManus, J.W. (ed.) 2001. Priorities for Caribbean Coral Reef Research: Results from an International Workshop of the National Center for Caribbean Coral Reef Research (NCORE), October 3-5, 2001, Miami, Florida. National Center for Caribbean Coral Reef Research, Rosenstiel School of Marine and Atmospheric Sciences, University of Miami, Miami, Florida. 51 p.

McManus, J.W. 2001. The death of a coral reef: Bolinao. Pp. 95-97. In: Tablbot, F. and Wilkinson, C. Coral reefs, mangroves and seagrasses: a handbook for managers.


Ellis, G., Moses, C., Swart, P.K., and Milne, P. 2000. Contributions of natural and anthropogenic nitrogen in the Florida Keys reef tract using stable isotope composition and natural sterol concentration, GSA Abstracts with Programs, p. 102.

McManus, J. W., Menez, L. A. B., Reyes, K. N. K., Vergara, S. G., and Ablan, M. C. 2000. Coral reef fishing and coral-algal phase shifts: implications for global reef status. ICES Journal of Marine Science, 57(3): 572–578.

Pollnac, R.B., McManus, J.W., del Rosario, A. E., Banzon, A.S., Vergara, S.G. and Gorospe, M.L.G. 2000. Unexpected relationships between coral reef health and socio-economic pressures in the Philippines: ReefBase/RAMP applied. Marine & Freshwater Research 51:529-533.


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